Computer Science and Engineering

Presentations

video "De novo meta-assembly of ultra-deep sequencing data", ISMB/ECCB 2015, Dublin, Ireland, July 2015.

webinar site youtube "Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space", eXtension webinar (with Tim Close), August 2013.

video "Computational Epigenetics", Indiana University School of Informatics, Indiana University-Purdue University Indianapolis, IN, November 2012.

video "Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space", IMA Workshop on Group Testing Designs, Algorithms, and Applications to Biology, Minneapolis, MN, February 2012.

video "Deconvoluting the BAC-gene relationships using a physical map", LSS Computational Systems Bioinformatics Conference (CSB'07), San Diego, CA, August 2007.

link "Computational challenges of the Barley Genome Project", University of Verona, July 2007.

"Error-resilient LZW data compression", IEEE Data Compression Conference (DCC'06), Snowbird, UT, March 2006.

"Pattern Discovery in Biosequences", Invited Tutorial at SIAM Data Mining Conference (SDM'05), Newport Beach, CA, 2005.

"Finding biclusters by random projections", Combinatorial Pattern Matching (CPM'04), Istanbul, Turkey, 2004.

"On Average Sequence Complexity", Combinatorial Pattern Matching (CPM'04), Istanbul, Turkey, 2004.

"Efficient Selection of Unique and Popular Oligos for Large EST Databases", Combinatorial Pattern Matching (CPM'03), Morelia, Mexico, 2003.

Joint Source-Channel LZ'77 Coding", IEEE Data Compression Conference (DCC'03), Snowbird, UT, March 2003.

"Authentication of LZ-77 compressed data", ACM Symposium on Applied Computing (SAC'03), Melbourne, FL, March 2003.

"Pattern Discovery in Biosequences", Invited Tutorial at Intelligent Systems for Molecular Biology (ISMB'02), Edmonton, Canada, August 2002.

"Fragile Watermarks for LZ-77", DIMACS Working Group Meeting on Data Compression in Networks and Application, Rutgers University, Piscataway, NJ, March 2002.

"Monotony of Surprise and Large-Scale Quest for Unusual Words", Southern California Theory Day, University of Southern California, Los Angeles, CA, February 2002.

"Compression of Biological Sequences by Greedy Off-line Textual Substitution", IEEE Data Compression Conference (DCC'00), Snowbird, Utah, March 2000.

"Some Theory and Practice of Greedy Off-Line Textual Substitution", IEEE Data Compression Conference (DCC'98), Snowbird, Utah, March 1998.

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